| 5'-C C N N N N N^N N G G-3' |
|
| 3'-G G N N^N N N N N C C-5' |
|
| Catalog # | B2908 |
| Source | Bacillus stearothermophilus LK 3–551 |
| Supplied With | R1625: Restriction Enzyme Buffer A, 10X |
| Concentration | 10u/ul |
| Unit Definition | One unit is defined as the amount of BseLI required to digest 1ug of lambda DNA dcm-in 1 hour at 55°C in 50ul of assay buffer. |
| Diluent Buffer | For short term storage (3-4 weeks)- dilute with 10mM Tris-HCl pH 7.4, 100mM KCl, 1mM EDTA, 1mM DTT, 0.2mg/ml BSA and 50% glycerol. |
| Storage Buffer | For long term storage: 10mM Tris-HCl pH 7.4, 100mM KCl, 1mM DTT, 1mM EDTA, 0.2mg/ml BSA and 50% glycerol. |
| R1625 | Restriction Enzyme Buffer A, 10X: |
| Suplied as a liquid in 33mM Tris-acetate pH 7.9, 10mM magnesium acetate, 66mM potassium acetate, 0.1mg/ml BSA. |
| Storage and Stability | May be stored at 4°C for short-term only. For long-term storage, store at -20°C. Aliquots are stable for 6 months at -20°C. For maximum recovery of product, centrifuge the original vial after thawing and prior to removing the cap. Further dilutions can be made in assay buffer. |
| Enzyme Properties | |
| Methylation Effects | |
| Dam | Never overlaps - no effect |
| Dcm | May overlap - cleavage impaired |
| CpG | May overlap - cleavage impaired |
| EcoKl | Never overlaps - no effect |
| EcoBl | Never overlaps - no effect |
|
| Stability during Prolonged Incubation | |
| A minimum of 0.1units of BseLI is required for complete digestion of 1ug of lambda DNA in 16 hours at 55°C. |
|
| Thermal Inactivation | |
| BseLI is inactivated by incubation at 80°C for 20min. |
|
| Inactivation Procedure | |
| To prepare the digested DNA. for electrophoresis | |
| 1. Stop the digestation rection by adding 0.5M EDTA, pH8, to achieve a 20mM final concentration. Mix thoroughly, add an electrophoresis loading dye and load onto gel. |
| To prepare DNA suitable for further enzymatic reactions | |
| 1. Extract with phenol/ chloroform, precipitate with ethanol or isopropanol, wash the pellet with 75% cold ethanol and let air dry. |
| 2. Dissolve DNA in either nuclease free water, TE buffer or a buffer suitable for further applications. Check the DNA concentration in the solution. |
|
| Number of Recognition Sites in DNA | |
| Lambda | 176 |
| M13mp18/19 | 17 |
| pBR322 | 20 |
| pUC18/19, pUC57 | 6 |
| pTZ19R/U | 7 |
| X174 | 19 |
| Note | BseLI cleavage is impaired by overlapping dcm methylation. To avoid dcm methylation, use a dam, dcm strain such as GM2163. |
|
| Quality Control | |
| Overdigestion Assay | No detectable change in the specific fragmentation pattern is observed after 160-fold overdigestion (10u/ug lambda DNA x 16 hours) with BseLI. |
|
| Ligation/Recutting Assay | After 50-fold overdigestion (3u/ug DNA x 17 hours) with BseLI, more than 95% of the DNA fragments can be ligated at a 5'-termini concentration of 1.6uM. More than 95% of these can be recut. |
|
| Labeled Oligonucleotide (LO) Assay | |
| No detectable degradation of a single-stranded and double-stranded labeled oligonucleotide was observed after incubation with 10units of restriction endonuclease for 4 hours. |